Read the dual battery SSP. It describes how the system will take something like 4 different approaches when attempting to start a dual battery setup. The main problem is that you've ignored lots of issues/faults and they've now stacked up and you're having to battle them all at once.
If you know you have a draw (handle, whatever) address it. Fix it properly, pull the fuse, unplug the component, etc. You've probably drained/damaged your batteries. Have them tested. Check/inspect starting and charging system,, cables, grounds.